Test tubes with pink liquid

Our Facilities

Test tubes with pink liquid

The laboratories of the Schubert group are equiped with the most advanced robotic platforms to perform automated synthesis and high throughput experimentation.

This in combination with high speed analysis equipment with over 10 LC systems equipped with autosamplers and high throughput extensions, Analytical Ultracentrifuges, automated parallel viscosity meter, GC and GS-MS, various UV/vis and IR spectrometers equipped with platereaders, RAMAN spectrometer, DLS, Elemental Analysis, MALDI-TOF-TOF and ESI-TOF-MS leads to a nearly perfect work flow. With the power of Batch-, stopped-flow- and continuous feed microwave assisted synthesis (with equipment from Biotage, CEM, Anton Paar and Milestone), inkjet printing, thermal analysis (DSC and various TGA equipment) and surface analysis such as Nanoindentation, Contact Angle measurement, Confocal Microscopy, AFM, TEM and SEM, the laboratories are to be considered state of the art.

Analytical Instruments

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Gas Chromatography

Two Shimadzu GCs (GC-2010) comprised of a general-purpose column with a low-polarity phase (diphenyl dimethylpolysiloxane) and a flame ionization detector allow for kinetic studies.

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Gas Chromatography - Mass Spectrometry

Furthermore, our labs are equipped with two Shimadzu GC-MS systems (GC-2010/GCMS-QP2010) both comprised of a  general-purpose column with a low-polarity phase (diphenyl dimethylpolysiloxane) and a quadrupole detector.

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Size Exclusion Chromatography

To characterize our macromolecules regarding their molar mass distributions, several SECs are running with various solvents both organic (chloroform, THF, dimethyl acetamide) and aqueous. The different SEC systems (Agilent/PSS, Jasco, Shimadzu) are equipped with RI and UV detectors for routine analysis as well as a viscometer and a multi angle light scattering detector to determine intrinsic viscosities and absolute molar masses, respectively. Additionally, one SEC is equipped with a semi-preparative column for polymer purification.

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Asymmetrical Flow Field-Flow Fractionation

Asymmetrical Flow Field-Flow Fractionation (AF4) allows for the separation and characterization of proteins, polymers, and nanoparticles in a time-efficient and gentle way. The separation is based on differences in the diffusion coefficient among sample components, while their size and molar mass is detected by laser light scattering.


Analytische Ultrazentrifugation Analytische Ultrazentrifugation

Analytical Ultracentrifugation 

Analytical Ultracentrifugation utilizes the density difference between colloid and solvent for their separation according to size, shape, and density in almost any solvent of choice. It is the most eminent method in colloidal characterization science and allows assessment of absolute molar masses, heterogeneity in samples, as well as degree of aggregation of colloidal objects. It is very powerful as well to characterize nanoparticulate materials.


Dynamische Lichtstreuung Dynamische Lichtstreuung

Dynamic Light Scattering Measurement

Dynamic light scattering makes use of the Brownian motion of colloidal objects in solution in order to derive their diffusion coefficient, consequently their estimated hydrodynamic diameter. The plate reader allows for many samples being run in an efficient fashion without manual interference.


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Automated Parallel Capillary Viscometry

The Lauda viscosity measuring system PVS 1/4 is an automated parallel system in which up to four capillaries can be used. The measuring stand S5 can work with Ubbelohde, Cannon-Fenske or Ostwald capillaries, covering a viscosity range from 0.3 up to 50.000 mPas. The autosampler provides a high sample throughput up to 63 samples, depending on reservoir size, which can be processed in one setting. Also hot polymer solutions or oils can be handled in the heated rack with heated dosing syringe. In addition, the cleaning module VRM provides fully automatic cleaning and drying of the viscometers. The attached dosimat allows the determination of the limiting viscosity through different concentration steps, in conjunction with a dilution viscometer, thus allowing the determination of the molar mass by using, e.g., the Mark-Houwink-Sakurada equation. 


Rheologie Rheologie


The Anton Paar Physica MCR 301 is based on a modular design which features special innovations such as an automatic measuring and accessory detection system, and a measuring gap detection system, as some examples. In addition, it provides a wide selection of measurement geometries (plate-plate, cone-plate, double-gap, etc.), interchangeable environmental systems (e.g. magnetorheological device and convection oven) and special accessories (e.g. solid bar fixture system). The high-resolution optical encoder enables precise measurements of the angular deflection, and together with the real time position control in oscillation, it is possible to control very small oscillatory strains. In addition, the air bearing synchronous motor shows a very low drift and low torque capabilities. With the convection temperature device CTD 450, a wide temperature range from -100 °C up to 450 °C can be covered together with different measuring systems.


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ESI/APCI-TOF mass spectrometer

The micrOTOF QII is a Time-of-Flight (TOF) mass spectrometer. The instrument is equipped with either an Electrospray Ionization (ESI) source for the analysis of polar analytes or an Atmospheric Pressure Chemical Ionization (APCI) source for the analysis of nonpolar substances. Additionally, the instrument can be coupled to an HPLC system (Agilent 1200 series with diode array detector) to separate sample components prior to mass spectrometry.


Laborgerät Laborgerät Image: FSU Jena/Nicole Fritz

Ion Mobility Mass Spectrometer

The timsTOF (Bruker Daltonics) complements our mass spectrometer pool with the additional option of ion mobility, which can provide further information in the characterization of compounds, e.g. on the three-dimensional structure.

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MALDI-TOF/TOF mass spectrometer

The Ultraflex III is a Matrix-assisted Laser Desorption/Ionization (MALDI) tandem mass spectrometer. Two operating modes of the Time-of-Flight (TOF) analyzer allow the analysis of large molecules in linear mode as well as the detection of small molecules with higher mass resolution using the reflector mode. The instrument is additionally equipped with a LIFT unit which enables the performance of MS/MS experiments.


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The rapifleX is the latest version of a MALDI-TOF/TOF mass spectrometer from Bruker Daltonics and is characterized by its analytical speed and higher resolution of mass spectra.

Cell culture facilities

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Class II Biological Safety Cabinets

For personnel and product protection the labs are equipped with overall five Maxisafe 2020 Class II Biological Safety Cabinets from Thermo Scientific used for cell culture work on eukaryotic cells and bacteria as well as for preparation of cytotoxic drugs or nanoparticle formulation under sterile conditions.


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Liquid nitrogen containers for cryoconservation of cells

For long term storage, primary cells and cell lines are stored in containers containing liquid nitrogen. By adding freezing additives a thawing and subsequent culture of the cells is possible.


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CO2 Incubators

For in vitro culture of cells overall four Thermo Scientific Heracell 240i CO2 Incubators with Stainless-Steel Chambers, one Eppendorf Galaxy 170 S incubator and one Memmert Inc 108 incubator provide the ideal in vitro environment concerning gas control, humidity and temperature. The large capacity models can accomodate shakers, roller bottle apparatus, and other small equipment.


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Lab shaker for bacteria culture

The Thermo Scientific MaxQ 4000 Benchtop Orbital shaker is used for cell culture of bacteria, solubility studies, extraction procedures, protein expression and many other applications.

The shaker platform has a capacity for up to six 2 L flasks. A clear, scratch-resistant lid allows sample monitoring without disturbing chamber temperature. Besides precise temperature control with ± 0.1 °C accuracy at 37 °C and speed control from 15 to 500 rpm, continuous and timed operation from 0.1 min to 999 min, and a soft-start feature is available.


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Ultrapure Water Purification System

GenPure System from Thermo Scientific provides highly deionized and sterile water for cell culture application, nanoparticle formulation and other purposes. It allows for simultaneous dispensing from two remote dispensers, one located in a Class II Biological Safety Cabinet for sterile water sampling. The system comes with leak detection, electronic dispensing for fully automatic volume control and feed water monitoring that alerts users to fluctuations in the feed water quality.


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Ultra-low temperature freezers

For storage of temperature sensitive chemicals and biomolecules as well as for materials from genetically modified organisms overall two -80°C freezers from Panasonic are available in the biolaboratories.


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Two Eppendorf Centrifuges 5804/5804 R (one with T-control range from -9°C to 40°C) with fixed and swing-bucket rotors for different tubes and multiwall plates offer a big versatility for applications in cell culture, biochemistry, molecular biology and nanoparticle formulation/purification. They have a maximum relative centrifugal force/speed of 20.000 x g /14.000 rpm.


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Two Systec VX-150 autoclaves are used for sterilization processes like the sterilization of liquids (such as culture media for bacteria), solids (such as instruments, pipettes, glassware), waste (destructive sterilization of liquid or solid waste from cell culture) and biological hazardous material. They have a high loading capacity of 150 l and digital documentation and data logging. 


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Drying ovens

Overall three Heratherm Ovens from Thermo Scientific are used for routine heating and drying applications of labware as well as for controlled incubation of e. g. self healing materials, nanoparticle stability studies etc. They can be operated between 50°C to 250°C and are equipped with automatic over-temperature alarm system, timer and corrosion-resistant stainless steel chambers with rounded corners.


Microscopy unit

Konfokales Laserscanningmikroskop Konfokales Laserscanningmikroskop

Confocal Laserscanning Microscope with Superresolution and Live cell imaging

With the Zeiss LSM 880 in combination with ELYRA Superresolution PS.1 we have a very flexible imaging system for conventional confocal laser scanning microscopy and 3D superresolution microscopy in one device. Equiped with a live cell imaging incubation unit imaging experiments with living cells over longer periods are possible. The ELYRA PS.1 provides two superresolution systems: (i) superresolution structured illumination (SR-SIM) to image fine structural details with up to twice the resolution of a conventional light microscope while remaining free to label your samples with conventional dyes; and (ii) superresolution photoactivated localization microscopy (PALM) for photo-activatable endogenously-expressed fluorescent proteins or synthetic dyes. With PALM a localization of small structures and even single molecules down to resolutions of 20 nm laterally and 50 nm axially is possible.

Logo of the DFG Logo of the DFG Image: Deutsche Forschungsgemeinschaft e.V.

Supported by the
German Research Foundation
(Deutsche Forschungsgemeinschaft, DFG)




Fluoreszenzmikroskop Fluoreszenzmikroskop

Fluorescence Microscope
with live cell imaging

The Zeiss Cell Observer Z1 is an inverse Microscope equipped with a highly precise XYZ motorized stage, with transmitted light [HAL light source] & Epi-Fluorescence source (Mercury vapor), Objectives: 5 x; 10 x; 20 x; 40 x providing a final magnification 50 x to 400 x, 1.4 Mega Pixel Color camera and black&white camera as well as AxioVision Software.

It is housed in a live cell incubation unit with gas,  humidity and temperature control.


Mikroskop invers Mikroskop invers

Inverse Microscope

Zeiss Axiovert A1 Inverse microscope with transmitted light [LED light source] and different objectives for every day use in cell culture work equipped with Long distance 5 x; 10 x; 20 x; 40 x with final magnification 50 x to 400 x, a 1.4 Mega Pixel Color camera and ZEN PRO Software.


Mikroskop Mikroskop

Stereo Microscope

The Zeiss Stemi 2000 Stereo microscope is perfect for microscopic analysis and manipulation of bigger three-dimensional objects. It is equipped with a top-light illumination [cold light source with split ring and swan neck lamps], fixed magnification positions from 0.65 x to 5 x + Zoom up to 7.7, final magnification up to 38 x, field of view up to
80 mm; a working distance up to 10 cm, 1.4 Mega Pixel Color camera and ZEN pro Software.


Transmissionselektronenmikroskop Transmissionselektronenmikroskop

Transmission electron microscope

The FEI Tecnai G² 20 is used to investigate nanoparticles as well as biological samples. The scope of applications covers in this sense the whole spectrum of studying crystalline structures up to the localization of nanoparticles in cells.

The system is facilitated with a number of measurement options, which allow, e.g. a three-dimensional determination of structures. This is enabled by a stage goniometer with a large tilt range of -70° to + 70°. Additionally, the TEM includes equipment for performing cryo-TEM investigations, which permits in particular the study of polymer nanoparticles in amorphous ice films, thus, maintaining the particles in a solution-like state. Sample preparation is conducted in this case with the help of a Vitrobot Mark IV system to ensure reproducible sample preparation. For biological systems a cryo ultramicrotome (RMS PowerTome) is used for preparation of thin sample slices. The TEM utilizes either a 1 x 1k Megaview camera (Olympus Soft Imaging Solution) or a high-resolution 4 x 4k CCD camera (EAGLE). Chemical analysis of sample composition is enabled by a EDX-System (Bruker), which works in combination with a scan control which operates in Scanning Transmission Electron Microscopy (STEM) mode.

Logo of the DFG Logo of the DFG Image: Deutsche Forschungsgemeinschaft e.V.

Supported by the
German Research Foundation
(Deutsche Forschungsgemeinschaft, DFG)

Logo EFRE and TMWWDG Logo EFRE and TMWWDG Image: Europäischer Fonds für regionale Entwicklung (EFRE)

Supported by the
European Regional Development Fund (ERDF)







Rasterelektronenmikroskop Rasterelektronenmikroskop

Scanning electron microscopy

Scanning electron microscopy investigations are acquired with a ZEISS Sigma VP system. This instrument is equipped with different detector systems (Secondary electron, In-Lens and Back-scattering detectors). For only poorly conductive samples an adaption of the vacuum in the measusurement chamber can be utilized to minimize charging effects. Local special analysis of the elemental sample composition can be performed utilizing an Oxford EDS system. The instrument further comes with a variety of different holders, including a heating stage and a STEM holder for TEM-like imaging as well as with a sputter coater (Safematic) with gold, chromium and platinum targets.

Logo of the DFG Logo of the DFG Image: Deutsche Forschungsgemeinschaft e.V.

Supported by the
German Research Foundation
(Deutsche Forschungsgemeinschaft, DFG)





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Scanning force microscopy

Within the group four scanning force microscopes (two NT-MDT Integra systems, one NT-MDT LS and a DI Multimode) are available. All microscopes are prepared for conducting measurements in liquids and can perform electrical conductivity scans. The NT-MDT systems facilitate moreover a powerful lithography software package, which allows structuring of samples with a nanometer resolution. The DI Multimode system additionally contains a stand-alone scanning tunneling microscopy unit to perform high resolution STM investigations of crystalline samples or molecules.


Raman Spektroskopie / Mikroskopie Raman Spektroskopie / Mikroskopie

FT-IR and Raman spectroscopy / microscopy

Chemical information on sample systems can be obtained by a fully equipped FT-IR spectrometer (Bruker Tensor 37 with Hyperion microscope and HT-X high-throughput module). By utilizing a home-build Brewster angle holder the sensitivity of the instrument allows even for the investigation of self-assembled monolayers (SAMs). Alternatively, a grazing-angle objective is at hand to study such systems.

Additionally, a Bruker Senterra confocal Raman microscope is used, which permits to acquire 3D information on the sample composition.


Biochemistry and Molecular Biology

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Multimode plate reader

TECAN Infinite M200 PRO offers high performance detection solutions based on monochromator optics with free wavelength selection (230 to 1.000 nm in absorbance mode and 280 to 850 nm in fluorescence mode), spectral scanning in both absorbance and fluorescence modes and additional temperature control. The luminescence module is completely separate from the fluorescence and absorbance optics, ensuring superb performance for glow, flash and dual-color luminescence applications. It is equipped with a NanoQuant Plate for absorbance-based, small volume nucleic acid analyses. Fluorescence signal detection in microplates is possible with top or bottom reading fluorescence measurements. All conventional multiwell plate formats up to 384 wells and custom designed plate formats can be measured.


CytoFLEX LX CytoFLEX LX Image: Anja Träger / FSU Jena


The CytoFLEX LX flow cytometer from Beckman Coulter is equipped with several lasers from 355 to 808 nm (405 nm, 488 nm, 561 nm, 638 nm) and allows simultaneous detection of several fluorescence signals (21 detectors). It can be loaded with single samples or with a 96-well plate and, thus, allows convenient sample measurement in cell-based assays, such as the quantification and analysis of nanoparticle uptake in cells, the measurement of cell vitality markers, or the expression of certain cellular structures.



Real-time PCR

The qTOWER3 from AnalytikJena is a real-time PCR thermal cycler with a patented fiber optic shuttle system with a light source powered by four high-performance LEDs which guarantees ideal excitation and detection of known fluorescent dyes up to the dark red. The silver block technology offers control accuracy of only ± 0.1°C over the entire 96 well block which is additionally equipped with a linear gradient function to adjust the instrument to new assays.


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Gel electrophoresis

For biochemical and molecular biologocal investigations both horizontal and vertical gel electrophoresis as well as western blotting equipment for analysis of nucleic acids and proteins are available.


BioImager BioImager

Gel and Blot Imager

DNR MF-ChemiBIS is an image analysis system for fluorescent, chemiluminescent, and colorimetric applications. It is equipped with a software controlled robotic camera which motorizes up and down automatically, zoom lens with a wide field of view, liquid cooled camera to temperatures down to -70°C enabling high accuracy, longer exposure time (up to 24 hours), minimal dark noise and full stability of the system. It includes an automatic drawer detection technology of the three different drawers (UV, WL, ECL) for an optimal match with the light source and sample.


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Bio Inkjet-printer

The Microdrop Professional printer is used for deposition of biological compounds, including enzymes, antibodies, proteins and cells onto planar substrates. The printer is a drop-on-demand inkjet printer and can be equipped with nozzles with varying diameters between 30 and 100 µm, which can produce picoliter to sub-nanoliter sized droplets. Based on the piezo controlled XY-table, these droplets are deposited on the substrate with µm precision.


Nanoparticle preparation and characterization

Supercritical fluid (SFP) particle formation system

The SFP from Extratex is a versatile equipment designed for extraction and particle formation processes in the lab - we use it for solvent free nanoparticle formulation.


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CrossFlow Filtration

With the Sartorius Stedim Crossflow filtration we can concentrate and clean up nanoparticle formulations using membrane technology with chemically resistant cellulose membrane ensuring high product recovery.


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Nanoparticle characterization

Malvern Panalytical NanoSight NS500  is a single particle zeta potential platform with integrated fluidics for automation. The instrument provides an easy-to-use, reproducible platform for nanoparticle characterization. It provides detailed and intuitive analysis of the size distribution and concentration of all types of nanoparticles from 10 nm to 2.000 nm in diameter. Single particle zeta potential measurements provide inherent high resolution zeta distributions which can be measured simultaneously with other NTA measurement parameters like size, particle concentration and can even operate whilst in fluorescence mode. Samples are introduced into the viewing chamber using the integrated fluidics capability. On-screen pump control allows for automatic sample handling, including loading, washing and dilution. Software-controlled motorized optical stages enable rapid relocation and refocusing. Sample temperature is fully programmable through the software.